miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST038605
species: Pristionchus pacificus
source: miRBase, original name: ppc-mir-55a (MI0011220)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCCGTAAGCCATTCTGTCGAG

miRNA*
AGGCAGCAATGCTAACGAGTGTG

mismatches: 3
bulges: 2

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pre-miRNA
ATGCTCACTCTGAGGGGAGTTGCCACTAGGCAGCAATGCTAACGAGTGTGTTGATCTTTCGTATCATCTCATACCCGTAAGCCATTCTGTCGAGCGGCTC
TCTCCATTCCGAGTGAGGAT


dot-bracket secondary structure
((.(((((((.((((((((..(((.((.(((((.((((((.(((.(((((.(((((....).))))...))))).))).)).))))))))).)).))).)
)))))..)).))))))).))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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